Difference between revisions of "Site Map"

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===Introduction===
 
===Introduction===
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The active pages on the Wiki are listed below. The top level pages, (= the navigation bar) are on the left hand side, with the links to ''direct'' descendants shown to the right. Other links exist in the system but are difficult to display in this format. Entries marked with a blue asterisk (<span style="color:blue;font-size:120%;font-weight:bold">*</span>) are partially completed, entries marked with a red asterisk (<span style="color:red;font-size:120%;font-weight:bold">*</span>) are still to do.
+
The active pages on the Wiki are listed below. The top level pages, (= the navigation bar) are on the left hand side, with the links to ''direct'' descendants shown to the right. Many other links exist in the system but are difficult to display in this format. Entries marked with a blue asterisk (<span style="color:blue;font-size:120%;font-weight:bold">*</span>) are partially completed, entries marked with a red asterisk (<span style="color:red;font-size:120%;font-weight:bold">*</span>) are still to do.
  
 
===The Project===
 
===The Project===
  
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{| class="wikitable" style="width: 95%;"
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{| style="width: 90%;background-color:#f6f6f6;"
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|-
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|-  
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! style="width: 20%; text-align:center;" | Level 1 !! style="width: 20%; text-align:center;" | Level 2 !! style="width: 20%; text-align:center;" | Level 3 !! style="width: 20%; text-align:left;" |
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! style="width: 30%;text-align:left;" | Level 1 !! style="width: 30%; text-align:left;" | Level 2 !! style="width: 30%; text-align:left;" | Level 3
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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|  [[Project_Overview|Overview]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || || |  
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|  [[Project_Overview|Overview]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Background_and_History|Project History]] <span style="color:blue;font-size:120%;font-weight:bold"> </span>|| [[Progress (EOSC Life)|Progress (EOSC Life)]] || ||  |  
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| [[Background_and_History|Project History]] => <span style="color:blue;font-size:120%;font-weight:bold"> </span>|| => [[Progress (EOSC Life)|Progress (EOSC Life)]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Related_Initiatives|Related Initiatives]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || || ||  |  
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| [[Related_Initiatives|Related Initiatives]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[MDR_Publications|Publications]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || || || |  
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| [[MDR_Publications|Publications]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| ([[Site_Map|Site Map]])<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || || |  
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| ([[Site_Map|Site Map]])<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Contact_us|Contact us]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || || || |  
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| [[Contact_us|Contact us]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || || |
 
|}
 
|}
  
 
===Metadata schemas===
 
===Metadata schemas===
  
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{| class="wikitable" style="width: 95%;"
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{| style="width: 90%;background-color:#f6f6f6;"
 
|-
 
|-
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! style="width: 20%; text-align:center;" | Level 1 !! style="width: 20%; text-align:center;" | Level 2 !! style="width: 20%; text-align:center;" | Level 3 !! style="width: 20%; text-align:left;" |
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! style="width: 30%;text-align:left;" | Level 1 !! style="width: 30%; text-align:left;" | Level 2 !! style="width: 30%; text-align:left;" | Level 3
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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|  [[The_ECRIN_Metadata_Schemas|Overview]] || [[Metadata Change History]] || style="padding-bottom:10px;" | [[JSON files v4 to v5 changes]]<br/>[[Study JSON v4]]<br/>[[Data Object JSON v4]]<br/>[[JSON files v3 to v4 changes]]<br/>[[Study JSON v3]]<br/>[[Data Object JSON v3]]<br/>[[JSON files v2 to v3 changes]]<br/>[[Study JSON v2]]<br/>[[Data Object JSON v2]]<br/>[[JSON files v1 to v2 changes]]<br/>[[Study JSON v1]]<br/>[[Data Object JSON v1]] || |
+
|  [[The_ECRIN_Metadata_Schemas|Overview]] =>  || => [[Metadata Change History]] || style="padding-bottom:10px;" | => [[JSON files v4 to v5 changes]]<br/>=> [[Study JSON v4]], => [[Data Object JSON v4]]<br/>=> [[JSON files v3 to v4 changes]]=> <br/>=> [[Study JSON v3]], => [[Data Object JSON v3]]<br/>=> [[JSON files v2 to v3 changes]]<br/>=> [[Study JSON v2]], => [[Data Object JSON v2]]<br/>=> [[JSON files v1 to v2 changes]]<br/>=> [[Study JSON v1]], => [[Data Object JSON v1]]   
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Summary_Tables|Summary Tables]] || || ||  |  
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| [[Summary_Tables|Summary Tables]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Schema_Description|Schema Description]] || ||  ||  |  
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| [[Schema_Description|Schema Description]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || ||  |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[JSON_Schema_for_Studies|Study schema JSON]] || || || |  
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| [[JSON_Schema_for_Studies|Study schema JSON]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[JSON_Schema_for_Objects|Object schema JSON]] || || || |  
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| [[JSON_Schema_for_Objects|Object schema JSON]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|}
 
|}
  
 
===Data Extraction===
 
===Data Extraction===
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[[Data_Collection_Overview|Overview]]<br/>
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{| style="width: 90%;background-color:#f6f6f6;"
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[[Data Structures|Data Structures]]<br/>
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|-
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[[Logging and Tracking|Logging & Tracking]]<br/>
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! style="width: 30%;text-align:left;" | Level 1 !! style="width: 30%; text-align:left;" | Level 2 !! style="width: 30%; text-align:left;" | Level 3 
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[[Downloading Data|Downloading Data]]<br/>
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|- style="vertical-align:top;"
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[[Missing PIDs and Hashing|PIDs and Hashes]]<br/>
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| [[Data_Collection_Overview|Overview]]<span style="font-size:120%;font-weight:bold"> </span> || => [[System Scheduling]] ||  |
−
[[Harvesting Data|Harvesting Data]]<br/>
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|- style="vertical-align:top;"
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[[Contextual Data|Contextual Data]]<br/>
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| [[Data Structures|Data Structures]] => <span style="font-size:120%;font-weight:bold"> </span> || => [[Backing up the data]]|| |
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[[Importing Data|Importing Data]]<br/>
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|- style="vertical-align:top;"
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[[Identifying Links between Studies|Study-study links]]<br/>
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| [[Logging and Tracking|Logging & Tracking]]<span style="font-size:120%;font-weight:bold"> </span> || ||  |
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[[Processing PubMed Data|PubMed Data]]<br/>
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|- style="vertical-align:top;"
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[[Aggregating Data|Aggregating Data]]<br/>
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| [[Downloading Data|Downloading Data]]<span style="font-size:120%;font-weight:bold"> </span> || || |
−
[[MDR Data Sources|Data Sources]]<br/>
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|- style="vertical-align:top;"
 +
| [[Missing PIDs and Hashing|PIDs and Hashes]]<span style="font-size:120%;font-weight:bold"> </span> || || |
 +
|- style="vertical-align:top;"
 +
| [[Harvesting Data|Harvesting Data]]<span style="font-size:120%;font-weight:bold"> </span> || || |
 +
|- style="vertical-align:top;"
 +
| [[Contextual Data|Contextual Data]] => <span style="font-size:120%;font-weight:bold"> </span> ||  => [[study attributes]]<br/>=> [[study features]]<br/>=> [[study_relationship_types]]<br/>=> [[object_classes]]<br/>=> [[object_types]]<br/>=> [[object_filter_types]]<br/>=> [[object_access_types]]<br/>=> [[object_instance_types]]<br/>=> [[object_relationship_types]]<br/>=> [[contribution_types]]<br/>=> [[dataset_consent_types]]<br/>=> [[dataset_de-identification_levels]]<br/>=> [[dataset_record_key_types]]<br/>=> [[date_types]]<br/>=> [[description_types]]<br/>=> [[doi_status_types]]<br/>=> [[identifier_types]]<br/>=> [[language_codes]]<br/>=> [[language_usage_types]]<br/>=> [[resource_types]]<br/>=> [[title_types]]<br/>=> [[topic_types]]<br/>=> [[topic_vocabularies]]<br/>=> [[units]]<br/>=> [[composite_hash_types]] || |
 +
|- style="vertical-align:top;"
 +
| [[Importing Data|Importing Data]]<span style="font-size:120%;font-weight:bold"> </span> || ||  |
 +
|- style="vertical-align:top;"
 +
| [[Identifying Links between Studies|Study-study links]]<span style="color:red;font-size:120%;font-weight:bold"> </span> || || |
 +
|- style="vertical-align:top;"
 +
| [[Processing PubMed Data|PubMed Data]] => <span style="font-size:120%;font-weight:bold"> </span> || => [[PubMed Data Structure]]<span style="font-size:120%;font-weight:bold"> </span>|| |
 +
|- style="vertical-align:top;"
 +
| [[Aggregating Data|Aggregating Data]]<span style="font-size:120%;font-weight:bold"> </span> || || |
 +
|- style="vertical-align:top;"
 +
| [[MDR Data Sources|Data Sources]] => <span style="font-size:120%;font-weight:bold"> </span> || => [[ClinicalTrials.gov SourceMetadata]] <span style="font-size:120%;font-weight:bold"> </span>|| |
 +
|}
  
 
===The Portal===
 
===The Portal===
  
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{| class="wikitable" style="width: 95%;"
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{| style="width: 90%;background-color:#f6f6f6;"
 
|-
 
|-
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! style="width: 20%; text-align:center;" | Level 1 !! style="width: 20%; text-align:center;" | Level 2 !! style="width: 20%; text-align:center;" | Level 3 !! style="width: 20%; text-align:left;" |  
+
! style="width: 30%;text-align:left;" | Level 1 !! style="width: 30%; text-align:left;" | Level 2 !! style="width: 30%; text-align:left;" | Level 3
 +
|- style="vertical-align:top;"
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| [[Portal_Functionality|Functionality]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || ||  |
 +
|- style="vertical-align:top;"
 +
| [[Portal_Technology|Technologies]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Portal_Functionality|Functionality]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || ||  || |  
+
| [[Elastic_Search_and_Indexing|Indexing with ES]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || ||  |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
−
| [[Portal_Technology|Technologies]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || ||  |  
+
| [[Portal_User_Guide|User Guide]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
−
| [[Elastic_Search_and_Indexing|Indexing with ES]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || ||  |
+
| [[Elastic_Search_API|Elastic Search API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 +
|- style="vertical-align:top;"
 +
| [[GraphQL_API|GraphQL API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 +
|}
 +
 
 +
=== Portal Resources===
 +
{| style="width: 90%;background-color:#f6f6f6;"
 +
|-
 +
! style="width: 30%;text-align:left;" | Level 1 !! style="width: 30%; text-align:left;" | Level 2 !! style="width: 30%; text-align:left;" | Level 3  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
−
| [[Portal_User_Guide|User Guide]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || || |  
+
| [[Legal_Diclaimer|Legal Disclaimer]] || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
−
| [[Elastic_Search_API|Elastic Search API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || || |  
+
| [[Sources_and_Contributors|Sources & Contributors]] || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
−
| [[GraphQL_API|GraphQL API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || || |  
+
| [[User_Guide|User Guide]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 
|}
 
|}

Latest revision as of 16:34, 10 May 2022

Introduction

The active pages on the Wiki are listed below. The top level pages, (= the navigation bar) are on the left hand side, with the links to direct descendants shown to the right. Many other links exist in the system but are difficult to display in this format. Entries marked with a blue asterisk (*) are partially completed, entries marked with a red asterisk (*) are still to do.

The Project

Level 1 Level 2 Level 3
Overview
Project History => => Progress (EOSC Life)
Related Initiatives*
Publications*
(Site Map)
Contact us*

Metadata schemas

Level 1 Level 2 Level 3
Overview => => Metadata Change History => JSON files v4 to v5 changes
=> Study JSON v4, => Data Object JSON v4
=> JSON files v3 to v4 changes=>
=> Study JSON v3, => Data Object JSON v3
=> JSON files v2 to v3 changes
=> Study JSON v2, => Data Object JSON v2
=> JSON files v1 to v2 changes
=> Study JSON v1, => Data Object JSON v1
Summary Tables
Schema Description
Study schema JSON
Object schema JSON

Data Extraction

Level 1 Level 2 Level 3
Overview => System Scheduling
Data Structures => => Backing up the data
Logging & Tracking
Downloading Data
PIDs and Hashes
Harvesting Data
Contextual Data => => study attributes
=> study features
=> study_relationship_types
=> object_classes
=> object_types
=> object_filter_types
=> object_access_types
=> object_instance_types
=> object_relationship_types
=> contribution_types
=> dataset_consent_types
=> dataset_de-identification_levels
=> dataset_record_key_types
=> date_types
=> description_types
=> doi_status_types
=> identifier_types
=> language_codes
=> language_usage_types
=> resource_types
=> title_types
=> topic_types
=> topic_vocabularies
=> units
=> composite_hash_types
Importing Data
Study-study links
PubMed Data => => PubMed Data Structure
Aggregating Data
Data Sources => => ClinicalTrials.gov SourceMetadata

The Portal

Level 1 Level 2 Level 3
Functionality*
Technologies*
Indexing with ES*
User Guide*
Elastic Search API*
GraphQL API*

Portal Resources

Level 1 Level 2 Level 3
Legal Disclaimer
Sources & Contributors
User Guide*
Retrieved from ‘http://ecrin-mdr.online/index.php?title=Site_Map&oldid=3498’