Difference between revisions of "Site Map"

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===Metadata schemas===
 
===Metadata schemas===
  
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! style="width: 20%; text-align:center;" | Level 1 !! style="width: 20%; text-align:center;" | Level 2 !! style="width: 20%; text-align:center;" | Level 3 !! style="width: 20%; text-align:left;" |
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|- style="vertical-align:top;"
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|  [[The_ECRIN_Metadata_Schemas|Overview]] || [[Metadata Change History]] || style="padding-bottom:10px;" | [[JSON files v4 to v5 changes]]<br/>[[Study JSON v4]], [[Data Object JSON v4]]<br/>[[JSON files v3 to v4 changes]]<br/>[[Study JSON v3]], [[Data Object JSON v3]]<br/>[[JSON files v2 to v3 changes]]<br/>[[Study JSON v2]], [[Data Object JSON v2]]<br/>[[JSON files v1 to v2 changes]]<br/>[[Study JSON v1]], [[Data Object JSON v1]] ||  |  
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|  [[The_ECRIN_Metadata_Schemas|Overview]] || [[Metadata Change History]] || style="padding-bottom:10px;" | [[JSON files v4 to v5 changes]]<br/>[[Study JSON v4]], [[Data Object JSON v4]]<br/>[[JSON files v3 to v4 changes]]<br/>[[Study JSON v3]], [[Data Object JSON v3]]<br/>[[JSON files v2 to v3 changes]]<br/>[[Study JSON v2]], [[Data Object JSON v2]]<br/>[[JSON files v1 to v2 changes]]<br/>[[Study JSON v1]], [[Data Object JSON v1]] |  
 
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|- style="vertical-align:top;"
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| [[Summary_Tables|Summary Tables]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || ||  |  
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| [[Summary_Tables|Summary Tables]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Schema_Description|Schema Description]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || ||  ||  |  
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| [[Schema_Description|Schema Description]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || ||  |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[JSON_Schema_for_Studies|Study schema JSON]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || || |  
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| [[JSON_Schema_for_Studies|Study schema JSON]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[JSON_Schema_for_Objects|Object schema JSON]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || || |  
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| [[JSON_Schema_for_Objects|Object schema JSON]]<span style="color:blue;font-size:120%;font-weight:bold"> </span> || || |
 
|}
 
|}
  
 
===Data Extraction===
 
===Data Extraction===
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|-
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|- style="vertical-align:top;"
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| [[Data_Collection_Overview|Overview]]<span style="font-size:120%;font-weight:bold"> </span> || ||  || |  
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| [[Data_Collection_Overview|Overview]]<span style="font-size:120%;font-weight:bold"> </span> || ||  |
 
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|- style="vertical-align:top;"
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| [[Data Structures|Data Structures]]<span style="font-size:120%;font-weight:bold"> </span> || [[SD table creation code]]<br/>[[AD table creation code]]|| ||  |  
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| [[Data Structures|Data Structures]]<span style="font-size:120%;font-weight:bold"> </span> || [[SD table creation code]]<br/>[[AD table creation code]]|| |
 
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|- style="vertical-align:top;"
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| [[Logging and Tracking|Logging & Tracking]]<span style="font-size:120%;font-weight:bold"> </span> || ||  ||  |  
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| [[Logging and Tracking|Logging & Tracking]]<span style="font-size:120%;font-weight:bold"> </span> || ||  |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Downloading Data|Downloading Data]]<span style="font-size:120%;font-weight:bold"> </span> || || || |  
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| [[Downloading Data|Downloading Data]]<span style="font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Missing PIDs and Hashing|PIDs and Hashes]]<span style="font-size:120%;font-weight:bold"> </span> || || || |  
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| [[Missing PIDs and Hashing|PIDs and Hashes]]<span style="font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Harvesting Data|Harvesting Data]]<span style="font-size:120%;font-weight:bold"> </span> || || || |  
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| [[Harvesting Data|Harvesting Data]]<span style="font-size:120%;font-weight:bold"> </span> || || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Contextual Data|Contextual Data]]<span style="font-size:120%;font-weight:bold"> </span> ||  [[study attributes]]<br/>[[study features]]<br/>[[study_relationship_types]]<br/>[[object_classes]]<br/>[[object_types]]<br/>[[object_filter_types]]<br/>[[object_access_types]]<br/>[[object_instance_types]]<br/>[[object_relationship_types]]<br/>[[contribution_types]]<br/>[[dataset_consent_types]]<br/>[[dataset_de-identification_levels]]<br/>[[dataset_record_key_types]]<br/>[[date_types]]<br/>[[description_types]]<br/>[[doi_status_types]]<br/>[[identifier_types]]<br/>[[language_codes]]<br/>[[language_usage_types]]<br/>[[resource_types]]<br/>[[title_types]]<br/>[[topic_types]]<br/>[[topic_vocabularies]]<br/>[[units]]<br/>[[composite_hash_types]] || ||  |  
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| [[Contextual Data|Contextual Data]]<span style="font-size:120%;font-weight:bold"> </span> ||  [[study attributes]]<br/>[[study features]]<br/>[[study_relationship_types]]<br/>[[object_classes]]<br/>[[object_types]]<br/>[[object_filter_types]]<br/>[[object_access_types]]<br/>[[object_instance_types]]<br/>[[object_relationship_types]]<br/>[[contribution_types]]<br/>[[dataset_consent_types]]<br/>[[dataset_de-identification_levels]]<br/>[[dataset_record_key_types]]<br/>[[date_types]]<br/>[[description_types]]<br/>[[doi_status_types]]<br/>[[identifier_types]]<br/>[[language_codes]]<br/>[[language_usage_types]]<br/>[[resource_types]]<br/>[[title_types]]<br/>[[topic_types]]<br/>[[topic_vocabularies]]<br/>[[units]]<br/>[[composite_hash_types]] || |
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
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| [[Importing Data|Importing Data]]<span style="font-size:120%;font-weight:bold"> </span> || ||  ||  |  
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| [[Importing Data|Importing Data]]<span style="font-size:120%;font-weight:bold"> </span> || ||  |
 
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| [[Identifying Links between Studies|Study-study links]]<span style="color:red;font-size:120%;font-weight:bold"> </span> || || || |  
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| [[Identifying Links between Studies|Study-study links]]<span style="color:red;font-size:120%;font-weight:bold"> </span> || || |
 
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|- style="vertical-align:top;"
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| [[Processing PubMed Data|PubMed Data]]<span style="font-size:120%;font-weight:bold"> </span> || [[PubMed Data Structure]]<span style="font-size:120%;font-weight:bold"> </span>|| || |  
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| [[Processing PubMed Data|PubMed Data]]<span style="font-size:120%;font-weight:bold"> </span> || [[PubMed Data Structure]]<span style="font-size:120%;font-weight:bold"> </span>|| |
 
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|- style="vertical-align:top;"
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| [[Aggregating Data|Aggregating Data]]<span style="font-size:120%;font-weight:bold"> </span> || || || |  
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| [[Aggregating Data|Aggregating Data]]<span style="font-size:120%;font-weight:bold"> </span> || || |
 
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| [[MDR Data Sources|Data Sources]]<span style="font-size:120%;font-weight:bold"> </span> || [[ClinicalTrials.gov SourceMetadata]] <span style="font-size:120%;font-weight:bold"> </span>|| || |  
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| [[MDR Data Sources|Data Sources]]<span style="font-size:120%;font-weight:bold"> </span> || [[ClinicalTrials.gov SourceMetadata]] <span style="font-size:120%;font-weight:bold"> </span>|| |
 
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===The Portal===
 
===The Portal===
  
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| [[Portal_Functionality|Functionality]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || ||  || |  
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| [[Portal_Functionality|Functionality]]<span style="color:blue;font-size:120%;font-weight:bold">*</span> || ||  |
 
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| [[Portal_Technology|Technologies]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || ||  |  
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| [[Portal_Technology|Technologies]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 
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| [[Elastic_Search_and_Indexing|Indexing with ES]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || ||  ||  |  
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| [[Elastic_Search_and_Indexing|Indexing with ES]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || ||  |
 
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| [[Portal_User_Guide|User Guide]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || || |  
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| [[Portal_User_Guide|User Guide]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 
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| [[Elastic_Search_API|Elastic Search API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || || |  
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| [[Elastic_Search_API|Elastic Search API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 
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| [[GraphQL_API|GraphQL API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || || |  
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| [[GraphQL_API|GraphQL API]]<span style="color:red;font-size:120%;font-weight:bold">*</span> || || |
 
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Revision as of 11:40, 24 November 2020

Introduction

The active pages on the Wiki are listed below. The top level pages, (= the navigation bar) are on the left hand side, with the links to direct descendants shown to the right. Other links exist in the system but are difficult to display in this format. Entries marked with a blue asterisk (*) are partially completed, entries marked with a red asterisk (*) are still to do.

The Project

Level 1 Level 2 Level 3
Overview
Project History => Progress (EOSC Life)
Related Initiatives*
Publications*
(Site Map)
Contact us*

Metadata schemas

Level 1 Level 2 Level 3
Overview Metadata Change History JSON files v4 to v5 changes
Study JSON v4, Data Object JSON v4
JSON files v3 to v4 changes
Study JSON v3, Data Object JSON v3
JSON files v2 to v3 changes
Study JSON v2, Data Object JSON v2
JSON files v1 to v2 changes
Study JSON v1, Data Object JSON v1 |
Summary Tables
Schema Description
Study schema JSON
Object schema JSON

Data Extraction

Level 1 Level 2 Level 3
Overview
Data Structures SD table creation code
AD table creation code
Logging & Tracking
Downloading Data
PIDs and Hashes
Harvesting Data
Contextual Data study attributes
study features
study_relationship_types
object_classes
object_types
object_filter_types
object_access_types
object_instance_types
object_relationship_types
contribution_types
dataset_consent_types
dataset_de-identification_levels
dataset_record_key_types
date_types
description_types
doi_status_types
identifier_types
language_codes
language_usage_types
resource_types
title_types
topic_types
topic_vocabularies
units
composite_hash_types
Importing Data
Study-study links
PubMed Data PubMed Data Structure
Aggregating Data
Data Sources ClinicalTrials.gov SourceMetadata

The Portal

Level 1 Level 2 Level 3
Functionality*
Technologies*
Indexing with ES*
User Guide*
Elastic Search API*
GraphQL API*
Retrieved from ‘http://ecrin-mdr.online/index.php?title=Site_Map&oldid=3000’