Difference between revisions of "Summary Tables"

From ECRIN-MDR Wiki
Jump to navigation Jump to search
(The Study schema)
(The Study schema)
 
(11 intermediate revisions by the same user not shown)
Line 1: Line 1:
 +
<p style="color:blue; text-align:right"><small>'''''Last updated: 20/09/2022'''''</small></p>
 +
 
These two tables, one for the study schema and the second for the Data Object schema, provide a quick summary of the data points in the schemas. They should be read in conjunction with the detailed schema description.
 
These two tables, one for the study schema and the second for the Data Object schema, provide a quick summary of the data points in the schemas. They should be read in conjunction with the detailed schema description.
 
<br/>
 
<br/>
Line 14: Line 16:
 
|| '''A.2 Study Identifiers''' <span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{identifier type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , Identifier value, source organisation, date, url link}''<br/><br/>  
 
|| '''A.2 Study Identifiers''' <span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{identifier type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , Identifier value, source organisation, date, url link}''<br/><br/>  
 
'''A4. Brief Description'''<br/><br/>
 
'''A4. Brief Description'''<br/><br/>
'''A.6 Study Features'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{feature type <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , feature value <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>}''<br/><br/>
+
'''A.6 Study Features'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{feature type <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , feature value <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>}''<br/>
'''A.7 Study Topics'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{topic type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , mesh coded?, mesh code, mesh value, original controlled terminology (CT)<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, CT code <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, original value}''<br/><br/>
+
'''A.7 Study Topics'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{topic type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , mesh coded?, mesh code <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, mesh value, original controlled terminology (CT)<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, CT code <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, original value}''<br/>
'''A.16 Study Countries'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{country geocode id <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> ,country}''<br/><br/>  
+
'''A.19 Study Contributors'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{contribution type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, name type, person details OR organisation }''<br/>For person details and organisation fields see C.2 below<br/>
 +
'''A.16 Study Countries'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{country geonames id <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> ,country}''<br/> '''A.18 Study Start Time'''<br/>''{month, year}'' <br/><br/>
  
 
|| '''A3. Study Titles'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{title text, title type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , language code<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , comments}''
 
|| '''A3. Study Titles'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{title text, title type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , language code<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , comments}''
Line 31: Line 34:
 
'''A13. Inter-study relationships'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>
 
'''A13. Inter-study relationships'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>
 
''{relationship type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , target study}''<br/><br/>
 
''{relationship type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , target study}''<br/><br/>
'''A.17 Study Sites'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{facility, city geocode id <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, city, country geocode id <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, country, status <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>}''<br/><br/>  
+
'''A.17 Study Sites'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{facility, city geonames id <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, city, country geonames id <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, country, status <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>}''<br/><br/>  
 
|}
 
|}
 
<span style="color:red;font-size:150%;font-weight:bold"> *</span> May be repeated  <span style="color:blue;font-size:150%;font-weight:bold"> &#10625;</span> Categorised value
 
<span style="color:red;font-size:150%;font-weight:bold"> *</span> May be repeated  <span style="color:blue;font-size:150%;font-weight:bold"> &#10625;</span> Categorised value
Line 54: Line 57:
 
| style="color:darkblue;font-weight:bold" colspan="3"| C. Creators and Contributors   
 
| style="color:darkblue;font-weight:bold" colspan="3"| C. Creators and Contributors   
 
|- style="vertical-align:top; background-color:white"
 
|- style="vertical-align:top; background-color:white"
| '''C.1 Creators'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{name type, person details OR organisation }''<br/> <br/>  
+
| '''C.1 Creators'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{name type, person details OR organisation}''<br/> <br/>
|| <span style="font-size:150%"> </span> <br/><br/><br/>''person details = given name, family name, full name, ORCID identifier, affiliation string, affiliation organisation (id, name, ROR id) <br/>organisation = organisation default name, MDR id and ROR id, if applicable''
+
Used mostly for the authors of journal articles - most other objects do not have named creators.
||  '''C.2 Contributors'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{contribution type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , name type, person details OR organisation }''<br/><br/>For most data objects contributors will be the contributors to the associated study or studies.<br/>
+
|| <span style="font-size:150%"> </span> <br/>'''''person details''' = given name, family name, full name, ORCID identifier, affiliation string, affiliation organisation (id, name, ROR id) <br/>'''organisation''' = organisation default name, MDR id and ROR id, if applicable''
For journal articles contributors will be authors, plus organisational study contributors
+
||  '''C.2 Contributors'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{contribution type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , name type, person details OR organisation }''<br/><br/>For most data objects contributors will be the contributors to the associated study or studies.
  
 
|- style="vertical-align:top; background-color:lightblue"
 
|- style="vertical-align:top; background-color:lightblue"
Line 71: Line 74:
 
'''E.5 Associated consent''' (datasets only)<br/>''{type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , specific restrictions, text description}''<br/><br/>'''E.6 Description'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{description type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , label, description text, language code<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>}''<br/><br/>  '''E.7 EOSC Category'''<span style="color:blue;font-size:150%;font-weight:bold"> &#10625;</span><br/><br/>
 
'''E.5 Associated consent''' (datasets only)<br/>''{type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , specific restrictions, text description}''<br/><br/>'''E.6 Description'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{description type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , label, description text, language code<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>}''<br/><br/>  '''E.7 EOSC Category'''<span style="color:blue;font-size:150%;font-weight:bold"> &#10625;</span><br/><br/>
 
'''E.8 Language'''<span style="color:blue;font-size:150%;font-weight:bold"> &#10625;</span><br/><br/>'''E.9 Inter-object relationships'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{ relationship type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , target object}''<br/><br/>  
 
'''E.8 Language'''<span style="color:blue;font-size:150%;font-weight:bold"> &#10625;</span><br/><br/>'''E.9 Inter-object relationships'''<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{ relationship type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , target object}''<br/><br/>  
|| '''E.10 Topics''' (of data object)<span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{topic type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , mesh coded?, mesh code, mesh value, original value}''<br/><br/>
+
|| '''E.10 Topics''' (of data object) <span style="color:red;font-size:150%;font-weight:bold"> *</span><br/>''{topic type<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span> , mesh coded?, mesh code <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, mesh value, original controlled terminology (CT)<span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, CT code <span style="color:blue;font-style:normal;font-weight:bold"> &#10625;</span>, original value}''
 
For most data objects topics should be the study topics.<br/>Journal articles will normally have their own listed topics
 
For most data objects topics should be the study topics.<br/>Journal articles will normally have their own listed topics
  

Latest revision as of 10:08, 11 November 2022

Last updated: 20/09/2022

These two tables, one for the study schema and the second for the Data Object schema, provide a quick summary of the data points in the schemas. They should be read in conjunction with the detailed schema description.

The Study schema

Mandatory Recommended Optional
A. The Source Study
A.1 Display Title
{display title, language code }





A.8 Study Type

A.9 Study Status


A.14 Linked Data Objects
*
{object identifiers}

A.15 Provenance String

A.2 Study Identifiers *
{identifier type , Identifier value, source organisation, date, url link}

A4. Brief Description

A.6 Study Features *
{feature type , feature value }
A.7 Study Topics *
{topic type , mesh coded?, mesh code , mesh value, original controlled terminology (CT), CT code , original value}
A.19 Study Contributors *
{contribution type, name type, person details OR organisation }
For person details and organisation fields see C.2 below
A.16 Study Countries *
{country geonames id ,country}
A.18 Study Start Time
{month, year}

A3. Study Titles *
{title text, title type , language code , comments}



A5. Data Sharing Statement

A10. Study Enrolment

A11. Study Gender Eligibility

A12. Min and Max Ages
{age, age units}

A13. Inter-study relationships *
{relationship type , target study}

A.17 Study Sites *
{facility, city geonames id , city, country geonames id , country, status }

* May be repeated Categorised value

The Data Object schema

Mandatory Recommended Optional
B. Data Object Identifiers
B.1 DOI


B.2 Display Title

B.6 Linked Studies *
{study identifiers}

B.7 Provenance String

B.3 Version B.4 Object Identifiers *
{Identifier type , Identifier value, source organisation, application date}

B.5 Object Titles *
{title text, title type , language code , comments }


C. Creators and Contributors
C.1 Creators *
{name type, person details OR organisation}

Used mostly for the authors of journal articles - most other objects do not have named creators.


person details = given name, family name, full name, ORCID identifier, affiliation string, affiliation organisation (id, name, ROR id)
organisation = organisation default name, MDR id and ROR id, if applicable
C.2 Contributors *
{contribution type , name type, person details OR organisation }

For most data objects contributors will be the contributors to the associated study or studies.
D. Object Dates
D.1 Publication Year D.2 Dates *
{date type , Is range, date as string, start year, start month, start day, end year, end month, end day, comments}
E. Object Attributes and Descriptors
E.1 Class

E.2 Type
E.3 Record key type (datasets only)
{type , text description}

E.4 De-identification level (datasets only)
{type , specific actions, text description}

E.5 Associated consent (datasets only)
{type , specific restrictions, text description}

E.6 Description *
{description type , label, description text, language code}

E.7 EOSC Category

E.8 Language

E.9 Inter-object relationships *
{ relationship type , target object}

E.10 Topics (of data object) *
{topic type , mesh coded?, mesh code , mesh value, original controlled terminology (CT), CT code , original value}

For most data objects topics should be the study topics.
Journal articles will normally have their own listed topics

F. Object Location and Access Details
F.1 Managing Organisation

F.2 Access Type

F.3 Access Details
{description, url of details, date url last checked}

F.4 Physical Resources *
{repository organisation, resource url , url accessible?, date url last checked, resource type , resource size, size units, comments }






(F3 is mandatory if access is non-public)

F.5 Rights
{name, rights uri, comments}

* May be repeated Categorised value