Difference between revisions of "Identifier types"
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+ | <p style="color:blue; text-align:right"><small>'''''Last updated: 19/04/2022'''''</small></p> | ||
Both studies and data objects can have multiple IDs in the MDR system, and this look up table stores the various types of identifier that can be referenced. The obvious missing type is DOI (Digital Object Identifier). This has a special status for data objects, as it is the default object identifier and is seen as one of the core attributes of an object. It is therefore not included in a list of ‘other identifiers’ and is therefore not in the lists below. | Both studies and data objects can have multiple IDs in the MDR system, and this look up table stores the various types of identifier that can be referenced. The obvious missing type is DOI (Digital Object Identifier). This has a special status for data objects, as it is the default object identifier and is seen as one of the core attributes of an object. It is therefore not included in a list of ‘other identifiers’ and is therefore not in the lists below. | ||
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{| class="wikitable" style="width: 95%;" | {| class="wikitable" style="width: 95%;" | ||
|- | |- | ||
− | ! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 10%;" | source | + | ! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 12%;" | use_in_data_entry !! style="width: 10%;" | source |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 11 || Trial | + | | 11 || Trial registry ID || style="padding-bottom:10px;" | Org id should identify the registry. || style="text-align:center;" | true || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | | + | | 41 || Regulatory body ID || style="padding-bottom:10px;" | Number generated by a national authority when a study applies for authorisation / ethical approval, e.g. IRAS number in the UK, ANSM number in France. || style="text-align:center;" | true || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | | + | | 12 || Ethics review ID || style="padding-bottom:10px;" | Org id should identify the review body. || style="text-align:center;" | true || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 14 || | + | | 13 || Funder’s ID || style="padding-bottom:10px;" | May be a grant id, org id should identify the funder. || style="text-align:center;" | true || style="text-align:center;" | ECRIN |
+ | |||
+ | |- style="vertical-align:top;" | ||
+ | | 14 || Sponsor’s ID || style="padding-bottom:10px;" | Org id should identify the sponsor. || style="text-align:center;" | true || style="text-align:center;" | ECRIN | ||
+ | |||
+ | |- style="vertical-align:top;" | ||
+ | | 39 || NIH CTRP ID || style="padding-bottom:10px;" | ID generated by the US NCI for supported cancer trials (in the Clinical Trial Reporting Program). || style="text-align:center;" | false || style="text-align:center;" | NIH | ||
+ | |||
+ | |- style="vertical-align:top;" | ||
+ | | 40 || DAIDS ID || style="padding-bottom:10px;" | ID generated for the protocol by the US NIH DAIDs for supported trials (allergy and infectious diseases). || style="text-align:center;" | false || style="text-align:center;" | NIH | ||
+ | |||
+ | |- style="vertical-align:top;" | ||
+ | | 42 || NHLBI ID || style="padding-bottom:10px;" | Accession number, from NHLBI study database. || style="text-align:center;" | false || style="text-align:center;" | NIH | ||
+ | |||
|} | |} | ||
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{| class="wikitable" style="width: 95%;" | {| class="wikitable" style="width: 95%;" | ||
|- | |- | ||
− | ! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 10%;" | source | + | ! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 12%;" | use_in_data_entry !! style="width: 10%;" | source |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 15 || Repository accession number|| style="padding-bottom:10px;" | Org id should identify the repository manager. || style="text-align:center;" | ECRIN | + | | 15 || Repository accession number || style="padding-bottom:10px;" | Org id should identify the repository manager. || style="text-align:center;" | false || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 16 || PMID|| style="padding-bottom:10px;" | ID assigned by PubMed. || style="text-align:center;" | PubMed | + | | 16 || PMID || style="padding-bottom:10px;" | ID assigned by PubMed. || style="text-align:center;" | true || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 31 || PMCID|| style="padding-bottom:10px;" | Pub med central ID, of the manuscript itself. || style="text-align:center;" | PubMed | + | | 31 || PMCID || style="padding-bottom:10px;" | Pub med central ID, of the manuscript itself. || style="text-align:center;" | true || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 32 || NIH | + | | 32 || NIH manuscript ID || style="padding-bottom:10px;" | A Manuscript ID, an identifier assigned to an author manuscript submitted to the NIH Manuscript Submission System. || style="text-align:center;" | false || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 36 || Medline UID|| style="padding-bottom:10px;" | Medline identifier. || style="text-align:center;" | PubMed | + | | 36 || Medline UID || style="padding-bottom:10px;" | Medline identifier. || style="text-align:center;" | false || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 17 || bioRxiv ID|| style="padding-bottom:10px;" | Pre-prints, ID assigned by Cold Spring Harbour Laboratory. || style="text-align:center;" | ECRIN | + | | 17 || bioRxiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by Cold Spring Harbour Laboratory. || style="text-align:center;" | false || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 18 || arXiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by Cornell university. || style="text-align:center;" | DataCite | + | | 18 || arXiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by Cornell university. || style="text-align:center;" | true || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 19 || psyXiv ID|| style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | ECRIN | + | | 19 || psyXiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | true || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 20 || socXiv ID|| style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | ECRIN | + | | 20 || socXiv ID|| style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | true || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 21 || Handle ID|| style="padding-bottom:10px;" | ID assigned by a naming authority (handle system is a superset of DOIs). || style="text-align:center;" | DataCite | + | | 21 || Handle ID || style="padding-bottom:10px;" | ID assigned by a naming authority (handle system is a superset of DOIs). || style="text-align:center;" | false || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 22 || ISBN|| style="padding-bottom:10px;" | International Standard Book Number, assigned by the publisher. || style="text-align:center;" | DataCite | + | | 22 || ISBN || style="padding-bottom:10px;" | International Standard Book Number, assigned by the publisher. || style="text-align:center;" | false || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 23 || ISTC|| style="padding-bottom:10px;" | International Standard Text code ID, assigned by the international ISTC agency. || style="text-align:center;" | DataCite | + | | 23 || ISTC || style="padding-bottom:10px;" | International Standard Text code ID, assigned by the international ISTC agency. || style="text-align:center;" | false || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 24 || ISAN|| style="padding-bottom:10px;" | International Standard Audiovisual Number, assigned by the ISAN international agency. || style="text-align:center;" | ECRIN | + | | 24 || ISAN || style="padding-bottom:10px;" | International Standard Audiovisual Number, assigned by the ISAN international agency. || style="text-align:center;" | false || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 25 || LSID|| style="padding-bottom:10px;" | Life Science Identifier, a URN like specification with various issuing authorities. || style="text-align:center;" | DataCite | + | | 25 || LSID|| style="padding-bottom:10px;" | Life Science Identifier, a URN like specification with various issuing authorities. || style="text-align:center;" | false || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 26 || Other | + | | 26 || Other bibliographic ID || style="padding-bottom:10px;" | Org id should identify the system manager. || style="text-align:center;" | false || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 33 || NRCBL || style="padding-bottom:10px;" | KIE Reference Library (bioethics library) shelving location. || style="text-align:center;" | PubMed | + | | 33 || NRCBL || style="padding-bottom:10px;" | KIE Reference Library (bioethics library) shelving location. || style="text-align:center;" | false || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 34 || Publisher article ID|| style="padding-bottom:10px;" | Internal reference of article publisher for journal article. || style="text-align:center;" | PubMed | + | | 34 || Publisher article ID || style="padding-bottom:10px;" | Internal reference of article publisher for journal article. || style="text-align:center;" | true || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 37 || PMC | + | | 37 || PMC publisher ID|| style="padding-bottom:10px;" | Publisher Id supplied to PubMed Central. || style="text-align:center;" | false || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 38 || PM | + | | 38 || PM publisher ID || style="padding-bottom:10px;" | Publisher Id supplied to PubMed. || style="text-align:center;" | false || style="text-align:center;" | PubMed |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 35 || Serial | + | | 35 || Serial item and contribution identifier || style="padding-bottom:10px;" | The Serial Item and Contribution Identifier (SICI), a code used to uniquely identify specific volumes, articles or other identifiable parts of a serial. || style="text-align:center;" | false || style="text-align:center;" | PubMed |
|} | |} | ||
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{| class="wikitable" style="width: 95%;" | {| class="wikitable" style="width: 95%;" | ||
|- | |- | ||
− | ! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 10%;" | source | + | ! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 12%;" | use_in_data_entry !! style="width: 10%;" | source |
+ | |||
+ | |- style="vertical-align:top;" | ||
+ | | 27 || URL|| style="padding-bottom:10px;" | Resource locator for a web based resource. || style="text-align:center;" | true || style="text-align:center;" | DataCite | ||
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | | + | | 28 || PURL|| style="padding-bottom:10px;" | Persistent URL that redirects if necessary. || style="text-align:center;" | false || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | | + | | 29 || URN|| style="padding-bottom:10px;" | Uniform Resource Name (a URI using the URN schema) that is location independent. || style="text-align:center;" | false || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | | + | | 30 || ARK|| style="padding-bottom:10px;" | Archival Resource Key, a URL that provides additional metadata. || style="text-align:center;" | false || style="text-align:center;" | DataCite |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | | + | | 90 || Other|| style="padding-bottom:10px;" | None of the listed identifier types. || style="text-align:center;" | true || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | | + | | 1 || Type not provided || style="padding-bottom:10px;" | Missing type data in data source. || style="text-align:center;" | false || style="text-align:center;" | ECRIN |
|- style="vertical-align:top;" | |- style="vertical-align:top;" | ||
− | | 0 || Not yet known|| style="padding-bottom:10px;" | Dummy value supplied by default on entity creation. || style="text-align:center;" | ECRIN | + | | 0 || Not yet known|| style="padding-bottom:10px;" | Dummy value supplied by default on entity creation. || style="text-align:center;" | false || style="text-align:center;" | ECRIN |
|} | |} | ||
<br><br> | <br><br> |
Latest revision as of 14:55, 10 May 2022
Last updated: 19/04/2022
Both studies and data objects can have multiple IDs in the MDR system, and this look up table stores the various types of identifier that can be referenced. The obvious missing type is DOI (Digital Object Identifier). This has a special status for data objects, as it is the default object identifier and is seen as one of the core attributes of an object. It is therefore not included in a list of ‘other identifiers’ and is therefore not in the lists below.
The identifiers fall into three groups: those that are applicable to studies, those that are applicable to data objects, and those that are applicable to both, and these groups are reflected in the three different lists. The distinction is also made in the identifier_types table, which has an additional field (applies_to) indicating to which of these groups any identifier belongs.
Within the MDR system, identifiers are always qualified by the name (and if possible the id) of the organisation that allocated them. In many cases that organisation is fixed for a particular type of id. It may be that the table could usefully be extended to store the allocating organisation ids when appropriate.
Note that identifiers 33 through 38 were added recently to accommodate the ids referenced in PubMed data. The exact relationship between the three ‘publisher IDs’ needs to be clarified.
Study identifiers
id | name | description | use_in_data_entry | source |
---|---|---|---|---|
11 | Trial registry ID | Org id should identify the registry. | true | ECRIN |
41 | Regulatory body ID | Number generated by a national authority when a study applies for authorisation / ethical approval, e.g. IRAS number in the UK, ANSM number in France. | true | ECRIN |
12 | Ethics review ID | Org id should identify the review body. | true | ECRIN |
13 | Funder’s ID | May be a grant id, org id should identify the funder. | true | ECRIN |
14 | Sponsor’s ID | Org id should identify the sponsor. | true | ECRIN |
39 | NIH CTRP ID | ID generated by the US NCI for supported cancer trials (in the Clinical Trial Reporting Program). | false | NIH |
40 | DAIDS ID | ID generated for the protocol by the US NIH DAIDs for supported trials (allergy and infectious diseases). | false | NIH |
42 | NHLBI ID | Accession number, from NHLBI study database. | false | NIH |
Data Object identifiers
id | name | description | use_in_data_entry | source |
---|---|---|---|---|
15 | Repository accession number | Org id should identify the repository manager. | false | ECRIN |
16 | PMID | ID assigned by PubMed. | true | PubMed |
31 | PMCID | Pub med central ID, of the manuscript itself. | true | PubMed |
32 | NIH manuscript ID | A Manuscript ID, an identifier assigned to an author manuscript submitted to the NIH Manuscript Submission System. | false | PubMed |
36 | Medline UID | Medline identifier. | false | PubMed |
17 | bioRxiv ID | Pre-prints, ID assigned by Cold Spring Harbour Laboratory. | false | ECRIN |
18 | arXiv ID | Pre-prints, ID assigned by Cornell university. | true | DataCite |
19 | psyXiv ID | Pre-prints, ID assigned by the Centre for Open Science. | true | ECRIN |
20 | socXiv ID | Pre-prints, ID assigned by the Centre for Open Science. | true | ECRIN |
21 | Handle ID | ID assigned by a naming authority (handle system is a superset of DOIs). | false | DataCite |
22 | ISBN | International Standard Book Number, assigned by the publisher. | false | DataCite |
23 | ISTC | International Standard Text code ID, assigned by the international ISTC agency. | false | DataCite |
24 | ISAN | International Standard Audiovisual Number, assigned by the ISAN international agency. | false | ECRIN |
25 | LSID | Life Science Identifier, a URN like specification with various issuing authorities. | false | DataCite |
26 | Other bibliographic ID | Org id should identify the system manager. | false | ECRIN |
33 | NRCBL | KIE Reference Library (bioethics library) shelving location. | false | PubMed |
34 | Publisher article ID | Internal reference of article publisher for journal article. | true | PubMed |
37 | PMC publisher ID | Publisher Id supplied to PubMed Central. | false | PubMed |
38 | PM publisher ID | Publisher Id supplied to PubMed. | false | PubMed |
35 | Serial item and contribution identifier | The Serial Item and Contribution Identifier (SICI), a code used to uniquely identify specific volumes, articles or other identifiable parts of a serial. | false | PubMed |
Study or Data Object identifiers
id | name | description | use_in_data_entry | source |
---|---|---|---|---|
27 | URL | Resource locator for a web based resource. | true | DataCite |
28 | PURL | Persistent URL that redirects if necessary. | false | DataCite |
29 | URN | Uniform Resource Name (a URI using the URN schema) that is location independent. | false | DataCite |
30 | ARK | Archival Resource Key, a URL that provides additional metadata. | false | DataCite |
90 | Other | None of the listed identifier types. | true | ECRIN |
1 | Type not provided | Missing type data in data source. | false | ECRIN |
0 | Not yet known | Dummy value supplied by default on entity creation. | false | ECRIN |