Difference between revisions of "Identifier types"

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{| class="wikitable" style="width: 95%;"
 
{| class="wikitable" style="width: 95%;"
 
|-
 
|-
! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 10%;" | source
+
! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 15%;" | use_in_data_entry !! style="width: 10%;" | source
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 11 || Trial registry ID || style="padding-bottom:10px;" | Org id should identify the registry. || style="text-align:center;" | ECRIN
+
| 11 || Trial registry ID || style="padding-bottom:10px;" | Org id should identify the registry. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 41 || Regulatory body ID || style="padding-bottom:10px;" | Number generated by a national authority when a study applies for authorisation / ethical approval, e.g. IRAS number in the UK, ANSM number in France. || style="text-align:center;" | ECRIN
+
| 41 || Regulatory body ID || style="padding-bottom:10px;" | Number generated by a national authority when a study applies for authorisation / ethical approval, e.g. IRAS number in the UK, ANSM number in France. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 12 || Ethics review ID || style="padding-bottom:10px;" | Org id should identify the review body. || style="text-align:center;" | ECRIN
+
| 12 || Ethics review ID || style="padding-bottom:10px;" | Org id should identify the review body. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 13 || Funder’s ID || style="padding-bottom:10px;" | May be a grant id, org id should identify the funder. || style="text-align:center;" | ECRIN
+
| 13 || Funder’s ID || style="padding-bottom:10px;" | May be a grant id, org id should identify the funder. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 14 || Sponsor’s ID || style="padding-bottom:10px;" | Org id should identify the sponsor.|| style="text-align:center;" | ECRIN
+
| 14 || Sponsor’s ID || style="padding-bottom:10px;" | Org id should identify the sponsor. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 39 || NIH CTRP ID || style="padding-bottom:10px;" | ID generated by the US NCI for supported cancer trials (in the Clinical Trial Reporting Program). || style="text-align:center;" | NIH
+
| 39 || NIH CTRP ID || style="padding-bottom:10px;" | ID generated by the US NCI for supported cancer trials (in the Clinical Trial Reporting Program). || style="text-align:center;" | true || style="text-align:center;" | NIH
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 40 || DAIDS ID || style="padding-bottom:10px;" | ID generated for the protocol by the US NIH DAIDs for supported trials (allergy and infectious diseases). || style="text-align:center;" | NIH
+
| 40 || DAIDS ID || style="padding-bottom:10px;" | ID generated for the protocol by the US NIH DAIDs for supported trials (allergy and infectious diseases). || style="text-align:center;" | true || style="text-align:center;" | NIH
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 42 || NHLBI ID || style="padding-bottom:10px;" | Accession number, from NHLBI study database. || style="text-align:center;" | NIH
+
| 42 || NHLBI ID || style="padding-bottom:10px;" | Accession number, from NHLBI study database. || style="text-align:center;" | true || style="text-align:center;" | NIH
 
   
 
   
 
|}
 
|}
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{| class="wikitable" style="width: 95%;"
 
{| class="wikitable" style="width: 95%;"
 
|-
 
|-
! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 10%;" | source
+
! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 15%;" | use_in_data_entry !! style="width: 10%;" | source
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 15 || Repository accession number || style="padding-bottom:10px;" | Org id should identify the repository manager. || style="text-align:center;" | ECRIN
+
| 15 || Repository accession number || style="padding-bottom:10px;" | Org id should identify the repository manager. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 16 || PMID || style="padding-bottom:10px;" | ID assigned by PubMed. || style="text-align:center;" | PubMed
+
| 16 || PMID || style="padding-bottom:10px;" | ID assigned by PubMed. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 31 || PMCID || style="padding-bottom:10px;" | Pub med central ID, of the manuscript itself. || style="text-align:center;" | PubMed
+
| 31 || PMCID || style="padding-bottom:10px;" | Pub med central ID, of the manuscript itself. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 32 || NIH manuscript ID || style="padding-bottom:10px;" | A Manuscript ID, an identifier assigned to an author manuscript submitted to the NIH Manuscript Submission System. || style="text-align:center;" | PubMed
+
| 32 || NIH manuscript ID || style="padding-bottom:10px;" | A Manuscript ID, an identifier assigned to an author manuscript submitted to the NIH Manuscript Submission System. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 36 || Medline UID || style="padding-bottom:10px;" | Medline identifier. || style="text-align:center;" | PubMed
+
| 36 || Medline UID || style="padding-bottom:10px;" | Medline identifier. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 17 || bioRxiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by Cold Spring Harbour Laboratory. || style="text-align:center;" | ECRIN
+
| 17 || bioRxiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by Cold Spring Harbour Laboratory. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 18 || arXiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by Cornell university. || style="text-align:center;" | DataCite
+
| 18 || arXiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by Cornell university. || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 19 || psyXiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | ECRIN
+
| 19 || psyXiv ID || style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 20 || socXiv ID|| style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | ECRIN
+
| 20 || socXiv ID|| style="padding-bottom:10px;" | Pre-prints, ID assigned by the Centre for Open Science. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 21 || Handle ID || style="padding-bottom:10px;" | ID assigned by a naming authority (handle system is a superset of DOIs). || style="text-align:center;" | DataCite
+
| 21 || Handle ID || style="padding-bottom:10px;" | ID assigned by a naming authority (handle system is a superset of DOIs). || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 22 || ISBN || style="padding-bottom:10px;" | International Standard Book Number, assigned by the publisher. || style="text-align:center;" | DataCite
+
| 22 || ISBN || style="padding-bottom:10px;" | International Standard Book Number, assigned by the publisher. || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 23 || ISTC || style="padding-bottom:10px;" | International Standard Text code ID, assigned by the international ISTC agency. || style="text-align:center;" | DataCite
+
| 23 || ISTC || style="padding-bottom:10px;" | International Standard Text code ID, assigned by the international ISTC agency. || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 24 || ISAN|| style="padding-bottom:10px;" | International Standard Audiovisual Number, assigned by the ISAN international agency. || style="text-align:center;" | ECRIN
+
| 24 || ISAN|| style="padding-bottom:10px;" | International Standard Audiovisual Number, assigned by the ISAN international agency. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
Line 87: Line 87:
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 26 || Other bibliographic ID || style="padding-bottom:10px;" | Org id should identify the system manager. || style="text-align:center;" | ECRIN
+
| 26 || Other bibliographic ID || style="padding-bottom:10px;" | Org id should identify the system manager. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 33 || NRCBL || style="padding-bottom:10px;" | KIE Reference Library (bioethics library) shelving location. || style="text-align:center;" | PubMed
+
| 33 || NRCBL || style="padding-bottom:10px;" | KIE Reference Library (bioethics library) shelving location. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 34 || Publisher article ID || style="padding-bottom:10px;" | Internal reference of article publisher for journal article. || style="text-align:center;" | PubMed
+
| 34 || Publisher article ID || style="padding-bottom:10px;" | Internal reference of article publisher for journal article. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 37 || PMC publisher ID|| style="padding-bottom:10px;" | Publisher Id supplied to PubMed Central. || style="text-align:center;" | PubMed
+
| 37 || PMC publisher ID|| style="padding-bottom:10px;" | Publisher Id supplied to PubMed Central. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 38 || PM publisher ID || style="padding-bottom:10px;" | Publisher Id supplied to PubMed. || style="text-align:center;" | PubMed
+
| 38 || PM publisher ID || style="padding-bottom:10px;" | Publisher Id supplied to PubMed. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 35 || Serial item and contribution identifier || style="padding-bottom:10px;" | The Serial Item and Contribution Identifier (SICI), a code used to uniquely identify specific volumes, articles or other identifiable parts of a serial. || style="text-align:center;" | PubMed
+
| 35 || Serial item and contribution identifier || style="padding-bottom:10px;" | The Serial Item and Contribution Identifier (SICI), a code used to uniquely identify specific volumes, articles or other identifiable parts of a serial. || style="text-align:center;" | true || style="text-align:center;" | PubMed
  
 
|}
 
|}
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{| class="wikitable" style="width: 95%;"
 
{| class="wikitable" style="width: 95%;"
 
|-
 
|-
! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 10%;" | source
+
! style="width: 3%; text-align:left;" | id !! style="width: 12%; text-align:left;" | name !! description !! style="width: 15%;" | use_in_data_entry !! style="width: 10%;" | source
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 27 || URL|| style="padding-bottom:10px;" | Resource locator for a web based resource. || style="text-align:center;" | DataCite
+
| 27 || URL|| style="padding-bottom:10px;" | Resource locator for a web based resource. || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 28 || PURL|| style="padding-bottom:10px;" | Persistent URL that redirects if necessary. || style="text-align:center;" | DataCite
+
| 28 || PURL|| style="padding-bottom:10px;" | Persistent URL that redirects if necessary. || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 29 || URN|| style="padding-bottom:10px;" | Uniform Resource Name (a URI using the URN schema) that is location independent. || style="text-align:center;" | DataCite
+
| 29 || URN|| style="padding-bottom:10px;" | Uniform Resource Name (a URI using the URN schema) that is location independent. || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 30 || ARK|| style="padding-bottom:10px;" | Archival Resource Key, a URL that provides additional metadata. || style="text-align:center;" | DataCite
+
| 30 || ARK|| style="padding-bottom:10px;" | Archival Resource Key, a URL that provides additional metadata. || style="text-align:center;" | true || style="text-align:center;" | DataCite
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 90 || Other|| style="padding-bottom:10px;" | None of the listed identifier types. || style="text-align:center;" | ECRIN
+
| 90 || Other|| style="padding-bottom:10px;" | None of the listed identifier types. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 1 || Type not provided || style="padding-bottom:10px;" | Missing type data in data source. || style="text-align:center;" | ECRIN
+
| 1 || Type not provided || style="padding-bottom:10px;" | Missing type data in data source. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|- style="vertical-align:top;"
 
|- style="vertical-align:top;"
| 0 || Not yet known|| style="padding-bottom:10px;" | Dummy value supplied by default on entity creation. || style="text-align:center;" | ECRIN
+
| 0 || Not yet known|| style="padding-bottom:10px;" | Dummy value supplied by default on entity creation. || style="text-align:center;" | true || style="text-align:center;" | ECRIN
  
 
|} 
 
|} 
  
 
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Revision as of 18:57, 21 April 2022

Both studies and data objects can have multiple IDs in the MDR system, and this look up table stores the various types of identifier that can be referenced. The obvious missing type is DOI (Digital Object Identifier). This has a special status for data objects, as it is the default object identifier and is seen as one of the core attributes of an object. It is therefore not included in a list of ‘other identifiers’ and is therefore not in the lists below.

The identifiers fall into three groups: those that are applicable to studies, those that are applicable to data objects, and those that are applicable to both, and these groups are reflected in the three different lists. The distinction is also made in the identifier_types table, which has an additional field (applies_to) indicating to which of these groups any identifier belongs.

Within the MDR system, identifiers are always qualified by the name (and if possible the id) of the organisation that allocated them. In many cases that organisation is fixed for a particular type of id. It may be that the table could usefully be extended to store the allocating organisation ids when appropriate.

Note that identifiers 33 through 38 were added recently to accommodate the ids referenced in PubMed data. The exact relationship between the three ‘publisher IDs’ needs to be clarified.

Study identifiers

id name description use_in_data_entry source
11 Trial registry ID Org id should identify the registry. true ECRIN
41 Regulatory body ID Number generated by a national authority when a study applies for authorisation / ethical approval, e.g. IRAS number in the UK, ANSM number in France. true ECRIN
12 Ethics review ID Org id should identify the review body. true ECRIN
13 Funder’s ID May be a grant id, org id should identify the funder. true ECRIN
14 Sponsor’s ID Org id should identify the sponsor. true ECRIN
39 NIH CTRP ID ID generated by the US NCI for supported cancer trials (in the Clinical Trial Reporting Program). true NIH
40 DAIDS ID ID generated for the protocol by the US NIH DAIDs for supported trials (allergy and infectious diseases). true NIH
42 NHLBI ID Accession number, from NHLBI study database. true NIH

Data Object identifiers

id name description use_in_data_entry source
15 Repository accession number Org id should identify the repository manager. true ECRIN
16 PMID ID assigned by PubMed. true PubMed
31 PMCID Pub med central ID, of the manuscript itself. true PubMed
32 NIH manuscript ID A Manuscript ID, an identifier assigned to an author manuscript submitted to the NIH Manuscript Submission System. true PubMed
36 Medline UID Medline identifier. true PubMed
17 bioRxiv ID Pre-prints, ID assigned by Cold Spring Harbour Laboratory. true ECRIN
18 arXiv ID Pre-prints, ID assigned by Cornell university. true DataCite
19 psyXiv ID Pre-prints, ID assigned by the Centre for Open Science. true ECRIN
20 socXiv ID Pre-prints, ID assigned by the Centre for Open Science. true ECRIN
21 Handle ID ID assigned by a naming authority (handle system is a superset of DOIs). true DataCite
22 ISBN International Standard Book Number, assigned by the publisher. true DataCite
23 ISTC International Standard Text code ID, assigned by the international ISTC agency. true DataCite
24 ISAN International Standard Audiovisual Number, assigned by the ISAN international agency. true ECRIN
25 LSID Life Science Identifier, a URN like specification with various issuing authorities. DataCite
26 Other bibliographic ID Org id should identify the system manager. true ECRIN
33 NRCBL KIE Reference Library (bioethics library) shelving location. true PubMed
34 Publisher article ID Internal reference of article publisher for journal article. true PubMed
37 PMC publisher ID Publisher Id supplied to PubMed Central. true PubMed
38 PM publisher ID Publisher Id supplied to PubMed. true PubMed
35 Serial item and contribution identifier The Serial Item and Contribution Identifier (SICI), a code used to uniquely identify specific volumes, articles or other identifiable parts of a serial. true PubMed

Study or Data Object identifiers

id name description use_in_data_entry source
27 URL Resource locator for a web based resource. true DataCite
28 PURL Persistent URL that redirects if necessary. true DataCite
29 URN Uniform Resource Name (a URI using the URN schema) that is location independent. true DataCite
30 ARK Archival Resource Key, a URL that provides additional metadata. true DataCite
90 Other None of the listed identifier types. true ECRIN
1 Type not provided Missing type data in data source. true ECRIN
0 Not yet known Dummy value supplied by default on entity creation. true ECRIN